Publications

Last-modified: 2007-06-14 (ÌÚ) 11:25:08 (4880d)

Representative publications

  • K Shinoda, Y Yachie, T Masuda, N Sugiyama, M Sugimoto, T Soga and M Tomita. 2006. HybGFS: a hybrid method for genome-fingerprint scanning. BMC Bioinformatics 7:479.
  • K Shinoda, M Sugimoto, N Yachie, N Sugiyama, T Masuda, M Robert, T Soga and M Tomita. 2006. Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks. Journal of Proteome Research 5:3312-3317.
  • Y. Ishihama, Y. Oda, T. Tabata, T. Sato, T. Nagasu, J. Rappsilber, and M. Mann. 2005. Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein. Mol Cell Proteomics 4:1265-1272.
  • M. Kokubu, Y. Ishihama, T. Sato, T. Nagasu, and Y. Oda. 2005. Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis. Anal Chem 77:5144-54.
  • Y. Ishihama, T. Sato, T. Tabata, N. Miyamoto, K. Sagane, T. Nagasu, and Y. Oda. 2005. Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nature Biotechnol 23:617-21.
  • H. Katayama, T. Tabata, Y. Ishihama, T. Sato, Y. Oda, and T. Nagasu. 2004. Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-beta-D-maltoside as an additive for gel-based membrane proteomics. Rapid Commun Mass Spectrom 18:2388-94.
  • J. Rappsilber*, Y. Ishihama* and M. Mann. 2003. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 75:663-70 (*shared first authors)
  • E. Lasonder, Y. Ishihama, J. S. Andersen, A. M. Vermunt, A. Pain, R. W. Sauerwein, W. M. Eling, N. Hall, A. P. Waters, H. G. Stunnenberg, and M. Mann. 2002. Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature 419:537-42.