Sample files can be downloaded from here.
Search fields reference are here.
FAQs are here.

emPAI Calc for Mascot (TM)

Select Protein Database:
Select Enzyme & Modification:
Set peptide MW range : From : To : (Da)
Set RT range (observable peptides):

From : To : min.
Select peptide type :
Peptide Filtering:

Select your Mascot file:

(C) 2007 Institute for Advanced Biosciences, Keio University
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